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Computational and Systems Biology Summer Institute
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| 2-Week Short Course Schedule: June 8 - June 20, 2008 |
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| Lecture Room: Rm 2128, Gerdin |
| Computer Lab Room: Hoover Hall |
| ISU Map: http://www.fpm.iastate.edu/maps/ |
Sunday |
Monday |
Tuesday |
Wednesday |
Thursday |
Friday |
Saturday |
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| 8
Welcome Reception and Orientation 6:00- 8:30 p.m. Hunziker House Reiman Gardens |
9 Lectures: 9:00-9:50 A1 10:00-10:50 A2 11:20-12:10 B1 Lab: 1:30-5:00 Introduction to Unix and Perl |
10
Lectures: 9:00-9:50 B2 10:00-10:50 B3 11:20-12:10 B4 Lab: 1:30-5:00 Introduction to R |
11
Lectures: 9:00-9:50 C1 10:00-10:50 C2 11:20-12:10 D1 Lab: 1:30-5:00 Genomic Informatics (I) |
12
Lectures: 9:00-9:50 D2 10:00-10:50 D3 11:20-12:10 D4 Lab: 1:30-5:00 Genomic Informatics (II) |
13
Lectures: 9:00-9:50 E1 10:00-10:50 E2 11:20-12:10 E3 Lab: 1:30-5:00 Molecular Structure |
14
Poster Session of Summer Research Projects 10:00 a.m.- 12:00 p.m. |
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Module A: Overview of Bioinformatics and Computational Systems Biology
A1: Orientation and Preview A2: Bioinformatics and Computational Systems Biology Module B: Statistical Foundations B1-B4: Statistical Foundations Perl |
Module C: Algorithmic Foundations
C1 - C2: Algorithmic Foundations Module D: Genomic Sequence Analysis D1: Pairwise Sequence Alignment D2: Multiple Sequence Alignment and Motifs D3: Hidden Markov Models D4: Spliced Alignment |
Module E: Structural Genomics
E1: Computational Biology Needs E2: Coarse Graining Structures E3: Structure and Dynamics of Proteins Lab: Protein Structure 101 |
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Lectures: 9:00-9:50 F1 10:00-10:50 F2 11:20-12:10 F3 Lab: 1:30-5:00 High Throughput Data Analysis(I) |
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Lectures: 9:00-9:50 F4 10:00-10:50 F5 11:20-12:10 F6 Lab: 1:30-5:00 High Throughput Data Analysis(II) |
18
Lectures: 9:00-9:50 G1 10:00-10:50 G2 11:20-12:10 G3 Lab: 1:30-5:00 Machine Learning |
19 Lectures: 9:00-9:50 G4 10:00-10:50 G5 11:20-12:10 H1 Lab: 1:30-5:00 Introduction to BioPerl |
20 Lectures: 9:00-9:50 H2 10:00-10:50 H3 11:20-12:10 H4 Lunch and Certificate Awards 12:30-2:00 Overview of PubMed Databases 2:15-3:30 Student Visits to Preferred Research Labs 3:30-5:00 |
21
Excursion for Continuing Students |
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Module F: Functional Genomics
F1: Introduction to Functional Genomics F2: Metabolomics F3: Proteomics F4: Exploratory Data Analysis F5: MetNet: Software suite for functional analysis F6: Comparative Genomics |
Module G: Computational Analysis of “Omics” data – Machine Learning Approaches
G1 - G5: Machine Learning Approaches in Bioinformatics and Computational Biology BioPerl |
Module H: Integrative Systems Biology and Future
PubMed Database |
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E-mail: mjmccunn@iastate.edu
URL: http://www.bioinformatics.iastate.edu/BBSI/
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All Rights Reserved