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Computational and Systems Biology Summer Institute
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| 2-Week Short Course Schedule: June 3 - June 16, 2007 |
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| Lecture Room: Gerdin, Rm 2134 |
| Computer Lab Room: Hoover Hall, Rm 2268 |
| ISU Map: http://www.fpm.iastate.edu/maps/ |
Sunday |
Monday |
Tuesday |
Wednesday |
Thursday |
Friday |
Saturday |
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Welcome Reception and Orientation 6:00- 8:30 p.m. Mahlstede Building Speer Room Reiman Gardens |
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Lectures: 9:00-9:50 A1 10:00-10:50 A2 11:20-12:10 B1 Lab: 1:30-5:00 Introduction to Unix and Perl |
5
Lectures: 9:00-9:50 B2 10:00-10:50 B3 11:20-12:10 B4 Lab: 1:30-5:00 Introduction to R |
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Lectures: 9:00-9:50 C1 10:00-10:50 C2 11:20-12:10 D1 Lab: 1:30-5:00 Genomic Informatics (I) |
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Lectures: 9:00-9:50 D2 10:00-10:50 D3 11:20-12:10 D4 Lab: 1:30-5:00 Genomic Informatics (II) |
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Lectures: 9:00-9:50 E1 10:00-10:50 E2 11:20-12:10 E3 Lab: 1:30-5:00 Molecular Structure |
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Poster Session of Summer Research Projects 10:00- 12:00 p.m. Molecular Biology Building |
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Module A: Overview of Bioinformatics and Computational Systems Biology
A1: Orientation and Preview Dr. Volker Brendel, Material (pdf) A2: Bioinformatics and Computational Systems Biology Dr. Drena Dobbs, Material (pdf, ppt) Module B: Statistical Foundations B1-B4: Statistical Foundations Dr. Karin Dorman , Material (pdf_1, pdf_2) Perl: Dr. Xuefeng Zhao |
Module C: Algorithmic Foundations
C1 - C2: Algorithmic Foundations Dr. Xiaoqiu Huang , Material (ppt ) Module D: Genomic Sequence Analysis D1: Pairwise Sequence Alignment Dr. Volker Brendel, Material (pdf ) D2: Multiple Sequence Alignment and Motifs Dr. Volker Brendel, Material( pdf ) D3: Hidden Markov Models Dr. Volker Brendel, Material (pdf ) D4: Spliced Alignment Dr. Volker Brendel, Material (pdf ) |
Module E: Structural Genomics E1: Computational Biology Needs Dr. Robert Jernigan , Material (pdf ) E2: Coarse Graining Structures Dr. Robert Jernigan , Material (pdf ) E3: Structure and Dynamics of Proteins Dr. Zhijun Wu , Material (ppt ) Lab: Protein Structure 101 Haitao Chen, Material (ppt) |
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Lectures: 9:00-9:50 F1 10:00-10:50 F2 11:20-12:10 F3 Lab: 1:30-5:00 High Throughput Data Analysis(I) |
12
Lectures: 9:00-9:50 F4 10:00-10:50 F5 11:20-12:10 F6 Lab: 1:30-5:00 High Throughput Data Analysis(II) |
13
Lectures: 9:00-9:50 G1 10:00-10:50 G2 11:20-12:10 G3 Lab: 1:30-5:00 Machine Learning |
14 Lectures: 9:00-9:50 G4 10:00-10:50 G5 11:20-12:10 G6 Lab: 1:30-5:00 Introduction to BioPerl |
15
Lectures: 9:00-9:50 H1 10:00-10:50 H2 11:20-12:10 H3 Lunch and Certificate Awards 12:30-2:00 Campanile Room @ MU Overview of PubMed Databases 2:15-3:30 Rm 32 Computer Lab of ISU Parks library Student Visits to Preferred Research Labs 3:30-5:00 |
16
Excursion for Continuing Students |
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Module F: Functional Genomics
F1: Introduction to Functional Genomics Dr. Julie Dickerson, Material (ppt ) F2: Metabolomics Dr. Basil Nikolau F3: Proteomics Dr. Guru Rao, Material (pdf ) F4: Exploratory Data Analysis Dr. Julie Dickerson, Material (pdf ) F5: MetNet: Software suite for functional analysis Dr. Eve Wurtele F6: Comparative Genomics Matthew Moscou, Material (pdf ) |
Module G: Computational Analysis of “Omics” data – Machine Learning Approaches
G1 - G6: Machine Learning Approaches in Bioinformatics and Computational Biology Dr. Vasant Honavar , Material (ppf) BioPerl: Dr. Xuefeng Zhao Material (ppt, tar) |
Module H: Integrative Systems Biology and Future
H1: Dr. Patrick Schnable H2: Dr. Volker Brendel H3: Dr. Robert Jernigan PubMed Database : Dr. Andrea Dinkelman |
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E-mail: mjmccunn@iastate.edu
URL: http://www.bioinformatics.iastate.edu/BBSI/
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All Rights Reserved