L. H. Baker Center for Bioinformatics & Biological Statistics
Computational & Systems Biology Summer Institute

Short Course

 

Daily Schedule

Morning
Lecture 1 (L1): 9-9:50 AM
Lecture 2 (L2): 10-10:50 AM
Coffee Break
Lecture 3 (L3):11:20-12:10 PM

Class Room: Room 2128, Gerdin Building
Lunch
12:10 -1:30 PM
Afternoon
1:30-5:00 PM   Lab Session

Lab Room:
2268 Hoover

*ON THURSDAY, JUNE 11 THE MORNING CLASS WILL BE IN ROOM 2134, GERDIN BUILDING.

 

Two-Week Class Schedule ( Syllabus )

  Sunday Monday Tuesday Wednesday Thursday Friday Saturday
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  7
Welcome Reception and Orientation

Speer Room
Mahlstede Building
Reiman Gardens
6:00 p.m

8
    Morning
L1: A
L2: C1
    Break
L3: C2

    Lunch

    Afternoon Lab
Unix & Perl/BioPerl

9
    Morning
L1: B1,
L2: D1,
    Break
L3: D2,

    Lunch

    Afternoon Lab
Genome Annotation
10
    Morning
L1: B2
L2: D3
    Break
L3: D4

    Lunch

    Afternoon Lab
Workflows
(BioExtract Server)
11
    Morning
L1: B3
L2: D5
    Break
L3: D6

    Lunch

    Afternoon Lab
R & Molecular Phylogeny

5:00 - 6:00 pm
Systems Biology Symposium 2009

12
8:00 AM - 6:20 PM
Systems Biology Symposium 2009
   

13
8:00 AM - 6:00 PM
Systems Biology Symposium 2009
(Optional)

   

Module A: Overview of Bioinformatics and Computational Systems Biology
A: Orientation and Preview

Module B: Statistical Foundations
B1-B3: Statistical Foundations

Module C: Algorithmic Foundations
C1 - C2: Algorithmic Foundations: Pairwise Sequence Alignment

Module D: Genome Informatics
D1-2: Hidden Markov Models I & II
D3: Database Searches
D4: Multiple Sequence Alignment & Motifs
D5-6: Molecular Phylogeny I & II

 

14
8:30 - 11:55 AM Systems Biology Symposium 2009
(Optional)

15
    Morning
L1: E1
L2: E2
     Break
L3: E3

    Lunch

    Afternoon Lab
Protein Modeling
5:30 - 7:30 PM
Molecular Biology Atrium

Poster Session of Summer Research Projects
16
    Morning
L1: F1
L2: F2
    Break
L3: F3

    Lunch

    Afternoon Lab

"Omics" Data Analysis

17
    Morning
L1: F4
L2: F5
    Break
L3: F6

    Lunch

    Afternoon Lab

18
    Morning
L1: G1
L2: G2
    Break
L3: G3
(Note: G123)
    Lunch

    Afternoon Lab

19
    Morning
L1: H1
L2: H2
    Break
L3: H3
(Note: H123)

 1:00-2:10 pm
Lunch &
Awards Ceremony
Campanile Room, Memorial Union


    Afternoon Lab


20

    Module E: Structural Genomics
E1: Computational Biology Needs
E2: Coarse Graining Structures
E3: Structure and Dynamics of Proteins
Module F: Functional Genomics
F1-F3: Microarray
F4: Proteomics
F5: Metabolomics
F6: Comparative Genomics
Module G: Computational Analysis of “Omics” data – Machine Learning Approaches
G1 - G3: Machine Learning Approaches in Bioinformatics and Computational Biology

Module H: Integrative Systems Biology and Future
H1-H3: Introduction to System Biology
 
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